PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027038m
Common NameEUTSA_v10027038mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 237aa    MW: 27245.7 Da    PI: 7.2522
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027038mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.31.5e-111281542
                     HHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF 15 kRrngilKKAeELSvLCdaevaviifss 42
                     kR++g++KK +EL +LC+++++ ii+s+
  Thhalv10027038m  1 KRKKGLMKKVNELATLCGINACAIIYSP 28
                     9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002661.79E-18149No hitNo description
PfamPF003196.4E-11129IPR002100Transcription factor, MADS-box
SMARTSM004329.6E-4138IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.148127IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-12156IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
KRKKGLMKKV NELATLCGIN ACAIIYSPYD SNPEVWLSDS GVQRIVSDFW IHFSDKGSPK  60
ASEHLKKQKK DNKELEMTQV MFQCLIGNTR MFHLNVIDLN NLSYLIEKYL KDINRRIKIL  120
ENAGMEMSDV GASTTTAPDA TIHELGSSSS PATAAAFFNP TQHHHQQQCR HPAFPNIGFY  180
EQNLNLNLNQ NHNQNQQWFI EMMNHSDQTS FAVEHISFPF MDDNHRNHHH QWTFTF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027038m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392079.11e-81agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-72AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4LZS11e-179V4LZS1_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006414727.11e-179(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-69AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]