PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027063m
Common NameEUTSA_v10027063mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 166aa    MW: 18097.2 Da    PI: 4.5629
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027063mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.91.4e-3251061100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                      +C+aCkvl+  C+ +Cv+apyfp+++p+kf  vhk+FGa+nv k+l++   ++ +re+a+++l yeAear+rdPv G +g+ l++++ l++lk+
  Thhalv10027063m   5 PCSACKVLKSVCTGECVFAPYFPSTEPEKFDRVHKIFGAENVYKILSNEtfSPLQREHAVKALSYEAEARIRDPVTGYYGMSLAYEKILNNLKE 98 
                      7*********************************************876569999*************************************** PP

           DUF260  93 elallkee 100
                      ++ ++k+e
  Thhalv10027063m  99 QIISAKNE 106
                      *9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.4994107IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-315103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTSNPCSACK VLKSVCTGEC VFAPYFPSTE PEKFDRVHKI FGAENVYKIL SNETFSPLQR  60
EHAVKALSYE AEARIRDPVT GYYGMSLAYE KILNNLKEQI ISAKNEIVAT MGPDKVPEYS  120
DTPMPDDFFM TQNQQMGDNH GADEASTSAT PPASSGGAND TQQTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-29510811112LOB family transfactor Ramosa2.1
5ly0_B4e-29510811112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027063m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413632.11e-122LOB domain-containing protein 35
SwissprotQ9FFL32e-44LBD35_ARATH; LOB domain-containing protein 35
TrEMBLV4LWR71e-121V4LWR7_EUTSA; Uncharacterized protein
STRINGXP_006413632.11e-121(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.12e-46LOB domain-containing protein 35