PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10027064m

Common Name

EUTSA_v10027064mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

NAC

Protein Properties

Length: 291aa MW: 33510.3 Da PI: 6.4005

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10027064m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.9	4.1e-53	6	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+ +yL +kveg ++el evi+e+d+yk+ePw+Lp k + +++ ew+fF++rdkky++g+r+nratk+gyWkatgkd+++ Thhalv10027064m 6 LPPGFRFHPTDEELIGYYLSRKVEGLEIEL-EVIPEIDLYKFEPWELPdKsFLPNRDMEWFFFCPRDKKYTNGSRTNRATKAGYWKATGKDRKI 98 79**************************.99**********96435556888******************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++k + +l+g +ktLvfy+grap g +t+W+mheyrl Thhalv10027064m 99 TCKsSCALTGYRKTLVFYEGRAPLGDRTNWFMHEYRL 135 8555679**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-59	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.558	6	159	IPR003441	NAC domain
Pfam	PF02365	7.9E-29	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGSSCLPPGF RFHPTDEELI GYYLSRKVEG LEIELEVIPE IDLYKFEPWE LPDKSFLPNR 60 DMEWFFFCPR DKKYTNGSRT NRATKAGYWK ATGKDRKITC KSSCALTGYR KTLVFYEGRA 120 PLGDRTNWFM HEYRLCDDDL SQKSSNFKEA FALCRVVKKN ERKAKALKNK NEQATGSGYS 180 SLATSPCRDE TTQFQSFKPE SSTTNDSSSI WISPDFILDS SKDYPQIHEV ASEYLPNYHF 240 QVTSANHHVE FPTGSSYLNV GQEIEQSVQP SSWTNYEYDQ TSSFHYTNLF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	6	165	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	6	165	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	6	165	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	6	165	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	6	165	20	174	NAC domain-containing protein 19
3swm_B	2e-51	6	165	20	174	NAC domain-containing protein 19
3swm_C	2e-51	6	165	20	174	NAC domain-containing protein 19
3swm_D	2e-51	6	165	20	174	NAC domain-containing protein 19
3swp_A	2e-51	6	165	20	174	NAC domain-containing protein 19
3swp_B	2e-51	6	165	20	174	NAC domain-containing protein 19
3swp_C	2e-51	6	165	20	174	NAC domain-containing protein 19
3swp_D	2e-51	6	165	20	174	NAC domain-containing protein 19
4dul_A	1e-51	6	165	17	171	NAC domain-containing protein 19
4dul_B	1e-51	6	165	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10027064m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL021889	1e-85	AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project).
GenBank	AL161547	1e-85	AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47.
GenBank	CP002687	1e-85	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006414166.1	0.0	NAC domain-containing protein 71
Swissprot	O49697	1e-157	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	V4MGG3	0.0	V4MGG3_EUTSA; Uncharacterized protein
STRING	XP_006414166.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2151	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-159	NAC domain containing protein 71

Link Out ? help Back to Top
Phytozome	Thhalv10027064m
Entrez Gene	18030424

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]