PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10027108m

Common Name

EUTSA_v10027108mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

LBD

Protein Properties

Length: 67aa MW: 7402.54 Da PI: 8.8708

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10027108m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	25.6	3.4e-08	5	62	1	67
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67 +C+a kvl+ C +C++ pyfp+++++kf k +l+ k+ ++ +re+++++l y+Aea Thhalv10027108m 5 PCSAYKVLKSVCIGECAFIPYFPSTESEKFDR--K------ILNN-KTFSPLQREHVVNALSYKAEA 62 7***************************9973..3......3332.334666777777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.589	4	66	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-5	5	61	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
MASNPCSAYK VLKSVCIGEC AFIPYFPSTE SEKFDRKILN NKTFSPLQRE HVVNALSYKA 60 EASKTL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10027108m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413629.1	2e-27	LOB domain-containing protein 35
TrEMBL	V4P6C1	5e-41	V4P6C1_EUTSA; Uncharacterized protein
STRING	XP_006413628.1	8e-42	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4525	14	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	1e-14	LOB domain-containing protein 10

Link Out ? help Back to Top
Phytozome	Thhalv10027108m
Entrez Gene	18028317