PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027169m
Common NameEUTSA_v10027169mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 103aa    MW: 11453.7 Da    PI: 8.4779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027169mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.2e-091258246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     g+WT+   + + +a + +  +   +W  +a+ +g g+t +++k ++  
  Thhalv10027169m 12 GSWTAKQNKAFEQALATYDQDtpnRWQNVAKVVG-GKTTEEVKKHYEL 58
                     89*****************99*************.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.301964IPR017884SANT domain
SMARTSM007174.9E-91062IPR001005SANT/Myb domain
PfamPF002493.0E-71257IPR001005SANT/Myb domain
SuperFamilySSF466895.31E-131268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-51266IPR009057Homeodomain-like
CDDcd001672.87E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MASSSMSSQG SGSWTAKQNK AFEQALATYD QDTPNRWQNV AKVVGGKTTE EVKKHYELLL  60
QDINSIENGH VPFQNYNTGG GCTNGRLIES IEEKRFRNMR LQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-367102393RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027169m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0503514e-98AL050351.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project).
GenBankAL1615944e-98AL161594.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90.
GenBankAY5195274e-98AY519527.1 Arabidopsis thaliana MYB transcription factor (At4g39250) mRNA, complete cds.
GenBankBT0246504e-98BT024650.1 Arabidopsis thaliana unknown protein (At4g39250) mRNA, complete cds.
GenBankCP0026874e-98CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411728.12e-72protein RADIALIS-like 1
SwissprotF4JVB83e-55RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLV4P1I75e-71V4P1I7_EUTSA; Uncharacterized protein
STRINGXP_006411728.18e-72(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-56RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]