PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027190m
Common NameEUTSA_v10027190mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 241aa    MW: 27066 Da    PI: 7.8623
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027190mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof107.19.4e-342177561
           zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                      + cprC+s+ntkfCyynnys+ qPry Ck+Crr+Wt+GG+lr++P+Gg  rk k+ 
  Thhalv10027190m 21 PRVCPRCNSDNTKFCYYNNYSMFQPRYICKNCRRHWTHGGTLRDIPIGGRGRKTKRP 77
                     678**************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-211676IPR003851Zinc finger, Dof-type
PfamPF027011.7E-302276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.6922276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MASSNIFVIG DNQMNEEKPP PRVCPRCNSD NTKFCYYNNY SMFQPRYICK NCRRHWTHGG  60
TLRDIPIGGR GRKTKRPKID QPSVSQVVSV EIQQVNHNQP LLNVQETNNF VGTLGPSSSA  120
VVAVGNHFGS LPEIHGDMVL PIRSVPPVNQ DYYDVGSNAL IGNPWINQPI DGNFYSYRVN  180
QEDQNKQNQS FNNNFMNMNH NAGISGSRES SDTDHMNKNN NKIENNCVPS SSDHMEKFGF  240
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027190m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004521.11e-149dof zinc finger protein DOF4.5
SwissprotQ9SUA98e-63DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4MIS81e-177V4MIS8_EUTSA; Uncharacterized protein
STRINGXP_006413829.11e-178(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-58Dof-type zinc finger domain-containing protein