PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027291m
Common NameEUTSA_v10027291mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 233aa    MW: 26348.1 Da    PI: 9.8024
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027291mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.6e-20126219195
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefel 92 
                      f+ ++++s+vl+++ l++p k  +++++ +++  ++++ + + r+W +k++  ++++r  +t+GWk+Fv++n+L+ gD++vF+  +   +  + 
  Thhalv10027291m 126 FLVAMKRSHVLTKCFLTIPIKWSAKNMSHEPQ--EVVM-QMNQRKWHMKFSSYRSPDRGGITTGWKKFVRDNHLCLGDVCVFEPAKPetKPLHI 216
                      778999********************877555..5664.4588********999999999***********************76541244444 PP

                      EEE CS
               B3  93 vvk 95 
                      +v 
  Thhalv10027291m 217 YVY 219
                      445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.858126224IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-20126217IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-17126224IPR003340B3 DNA binding domain
PfamPF023621.8E-17126222IPR003340B3 DNA binding domain
CDDcd100178.91E-21126222No hitNo description
SuperFamilySSF1019368.89E-21126218IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEGNCRNCMR REEEIYWNQF QTHHFSHLLL PDFHSRLVSP SLLVSQAGFE QDERINSDII  60
TEAGQLPVTS PTSGGKYPLS VSKKKRGEIS NNNLDPKAAS SRTSVSETCK RKALSLAKSA  120
VSANGFLVAM KRSHVLTKCF LTIPIKWSAK NMSHEPQEVV MQMNQRKWHM KFSSYRSPDR  180
GGITTGWKKF VRDNHLCLGD VCVFEPAKPE TKPLHIYVYI FRAAETESSS NNG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027291m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005650.11e-141B3 domain-containing protein REM16
SwissprotQ8RYD13e-72REM16_ARATH; B3 domain-containing protein REM16
TrEMBLV4MBN81e-176V4MBN8_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006412371.11e-176(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-67B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]