PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027294m
Common NameEUTSA_v10027294mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 414aa    MW: 47033.3 Da    PI: 8.5489
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027294mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-1787133148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+q+G + W+ I++++  gR +kqc++rw+++l
  Thhalv10027294m  87 KGQWTAEEDRKLIRLVRQHGERKWAMISEKLE-GRAGKQCRERWHNHL 133
                      799*****************************.*************97 PP
2Myb_DNA-binding55.51.3e-17140181245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE+ +lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
  Thhalv10027294m 140 DGWSEEEERILVEAHTRIGNK-WAEIAKLIP-GRTENSIKNHWN 181
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.22482137IPR017930Myb domain
SuperFamilySSF466891.26E-2984180IPR009057Homeodomain-like
SMARTSM007175.0E-1686135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2788140IPR009057Homeodomain-like
PfamPF139219.2E-1990147No hitNo description
CDDcd001674.86E-1590133No hitNo description
PROSITE profilePS5129418.888138188IPR017930Myb domain
SMARTSM007175.4E-15138186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-20141186IPR009057Homeodomain-like
CDDcd001672.23E-11142184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MERFLYGQKN DALCSKKQEC SRDRSIVKKT REMEIKNDNK ENMTFGPRKE KHLVVNGRSP  60
TEDMVIKDAT RDYHNTSKKR PYKNLIKGQW TAEEDRKLIR LVRQHGERKW AMISEKLEGR  120
AGKQCRERWH NHLRPDIKKD GWSEEEERIL VEAHTRIGNK WAEIAKLIPG RTENSIKNHW  180
NATKRRQNSK RQQKRQANAV NNDRDLSPSA KRPCILQDYI KSIDNNDTNK GNGENKYIMN  240
TNSVVSTPNL DQIYSDGDSS SSVLGDPYDE ELVYLQNIFA NHPISLENIG LSQTCDEVNH  300
SSSSGFMIKN PNSHSNVETH HHDQAMVAVP SNTPHLASDI YLSYLLNGTT SSYSNPHFPS  360
SSSSSASSTT VEYGGHSELL VPQANSTSER RDMDLIEMLS GSIQGSNTCF PLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-45851872104C-Myb DNA-Binding Domain
1msf_C2e-45851872104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183194KRRQNSKRQQKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027294m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414488.10.0transcription factor MYB119
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLV4P8I70.0V4P8I7_EUTSA; Uncharacterized protein
STRINGXP_006414488.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]