PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027321m
Common NameEUTSA_v10027321mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 241aa    MW: 27107 Da    PI: 6.9318
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027321mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof101.35.8e-322176560
           zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      + cprC+s+ntkfCyynnys+sqPry Ck+Crr+Wt+GG+lr++ +Gg   k k+
  Thhalv10027321m 21 PRVCPRCNSDNTKFCYYNNYSVSQPRYICKNCRRHWTHGGTLRDISIGGHGLKTKR 76
                     678*********************************************98877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-201676IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.4992276IPR003851Zinc finger, Dof-type
PfamPF027012.1E-292276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MANSNIFVIG DNQVTEEKPP PRVCPRCNSD NTKFCYYNNY SVSQPRYICK NCRRHWTHGG  60
TLRDISIGGH GLKTKRPKID QPSVSQIVSV EIQQVNHNQP FLNVQETNNF VGTLGPSSST  120
VVAVGNHFDF LPEIHGDMVL PIRSVPPVNQ DYYDVGSNAL IGNPWINQPI DGNFYSYRIN  180
QEDQNKQNQN FNNNIMNINH NAGISGSRES SDIDHMNKNN NKIENNCVPS SSDYMEKFGF  240
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027321m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408692.11e-144dof zinc finger protein DOF4.4
SwissprotQ9SUA92e-62DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4LXC61e-176V4LXC6_EUTSA; Uncharacterized protein
STRINGXP_006413887.11e-177(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-55Dof-type zinc finger domain-containing protein