PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027332m
Common NameEUTSA_v10027332mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 251aa    MW: 28905.8 Da    PI: 4.9313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027332mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-115799754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       Er+RR+++N++++ Lr+++P+      +Kl+Ka++ +  ++Y+++L
  Thhalv10027332m 57 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASVIKDSIDYMQEL 99
                     57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6825099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-105399No hitNo description
SuperFamilySSF474592.09E-1654121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1656118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-95799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEDLEDEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGET SSPDGAATSP VSSKNVVSER  60
NRRQKLNQRL FALRSVVPNI TKLDKASVIK DSIDYMQELI DQEKRLEAEI RELESRSMLL  120
ENPPRDYDCI NNFAENQQQD LSDINGMRSK KFKHIDYNTF GSSNTRVHNH SLIEVLEMKV  180
TWMGEKTVVV CITCSKKRET MLQLCKVLES LNLNILTTNF SSFSSRLSTT LFLQVTLTLS  240
IFIHFLTISL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027332m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412786.21e-174transcription factor bHLH27
SwissprotQ700E31e-143BH027_ARATH; Transcription factor bHLH27
TrEMBLV4MCR60.0V4MCR6_EUTSA; Uncharacterized protein
STRINGXP_006412786.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-131bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]