PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027456m
Common NameEUTSA_v10027456mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 197aa    MW: 21801.3 Da    PI: 7.879
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027456mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof105.62.7e-332075560
           zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      + cprC+s+ntkfCyynnys+sqPry Ck+Crr+Wt+GG+l+ +P+Gg+  k k+
  Thhalv10027456m 20 PRVCPRCNSDNTKFCYYNNYSVSQPRYICKNCRRHWTHGGTLKEIPIGGSGHKTKR 75
                     678***********************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-221575IPR003851Zinc finger, Dof-type
PfamPF027012.9E-302175IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.2732175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MANSNVFIGD SQVNEEKPPP RVCPRCNSDN TKFCYYNNYS VSQPRYICKN CRRHWTHGGT  60
LKEIPIGGSG HKTKRPKINQ PSVSQVVSVD IQQVNHNQPF LNVQETNNFV GTFGPSSSSS  120
IVAVGNHFGS LPEIHGDMVL PIRSVPPMNR LEFSEGSFHQ DYFDVGSNAL IGNPCINQPI  180
GRHANSFSSY HINQED*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027456m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414786.11e-144dof zinc finger protein DOF4.3
SwissprotQ9SUA92e-73DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4MI071e-142V4MI07_EUTSA; Uncharacterized protein
STRINGXP_006414786.11e-143(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-69Dof-type zinc finger domain-containing protein