PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027470m
Common NameEUTSA_v10027470mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 81aa    MW: 9498.33 Da    PI: 10.555
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027470mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.37.1e-22957149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ie+k +r++ f+kR+ g+lKKA+EL +LCd+++a++ fs++gkl+ +
  Thhalv10027470m  9 KKIEDKQQRNIAFAKRKSGLLKKAYELYILCDVQIALVFFSPSGKLFLF 57
                     78********************************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.862161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-26160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-26276IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-22323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MGRVKIQMKK IEDKQQRNIA FAKRKSGLLK KAYELYILCD VQIALVFFSP SGKLFLFDSK  60
TRIEETIHKY LELPCYRRGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-18172171MEF2 CHIMERA
6byy_B2e-18172171MEF2 CHIMERA
6byy_C2e-18172171MEF2 CHIMERA
6byy_D2e-18172171MEF2 CHIMERA
6bz1_A2e-18172171MEF2 CHIMERA
6bz1_B2e-18172171MEF2 CHIMERA
6bz1_C2e-18172171MEF2 CHIMERA
6bz1_D2e-18172171MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027470m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411890.23e-51truncated transcription factor CAULIFLOWER D
SwissprotQ9LM462e-24AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLV4MKU52e-51V4MKU5_EUTSA; Uncharacterized protein
STRINGXP_006411890.14e-52(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-27AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]