PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027500m
Common NameEUTSA_v10027500mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 229aa    MW: 25139 Da    PI: 11.1768
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027500mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.6e-1463109354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+ +ErrRR riNs f+ Lr++lP++     +K +Ka++L ++v+Y ++L
  Thhalv10027500m  63 KKHSDAERRRRLRINSQFAALRTILPNL-----TKQDKASVLGETVRYFNEL 109
                      68*************************9.....9**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1452115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.60560109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-1263109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-1063114No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1364113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-1266115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.6E-4139202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVLLQQLEQG MRPLSRCYNP TAYSTTMGRT FFNGGATSSN LFSRGFSAAK PKSKTVSKEV  60
AAKKHSDAER RRRLRINSQF AALRTILPNL TKQDKASVLG ETVRYFNELK KMIKEVPTTP  120
ALEDNLRLGH CNNNRDIARV VFSCSDREGL MSEVAASMKA ANAKAVRAEI MTVGGRTKCA  180
LFLQGVNGNE GLIRLKKSLK PVVNRKSSSS ILMAKHNNNG GSFLTQQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027500m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775870.0AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411819.11e-168transcription factor bHLH131
SwissprotP0CB251e-131BH131_ARATH; Transcription factor bHLH131
TrEMBLV4MDH71e-167V4MDH7_EUTSA; Uncharacterized protein
STRINGXP_006411819.11e-168(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-113bHLH family protein