PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10027549m

Common Name

EUTSA_v10027549mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 247aa MW: 27679.7 Da PI: 6.6053

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10027549m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	45	94	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ + f+ Lr++lP ++K ++ + Av++Ik+ Thhalv10027549m 45 KLLHRDIERQRRQEMATLFASLRTHLPLqY---IKGKRAVSDHVNGAVNFIKD 94 6679**********************66...9999999*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-12	40	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.509	43	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-7	45	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-7	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.19E-6	49	94	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDHYQNSNPK GYQRQRPFGS SGDGGSSGGG SDMPHEIDDH KKKKKLLHRD IERQRRQEMA 60 TLFASLRTHL PLQYIKGKRA VSDHVNGAVN FIKDTETRIK ELSARRDELS RETDQRYTSN 120 PDPANTRPEL GKSDPASVMV QPCVSGFEVA VSSNSSGPEA LPLSRVLEAL QEQGLEVISS 180 LTTRVNERLM HTIQVENNYT VDLLTNVMDS CSFDINKLLN AYDNHDDDYS GKKEAYCHKE 240 KPEFNA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10027549m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024005701.1	1e-144	transcription factor bHLH126
Swissprot	Q9STJ6	1e-98	BH126_ARATH; Transcription factor bHLH126
TrEMBL	V4MHG9	0.0	V4MHG9_EUTSA; Uncharacterized protein
STRING	XP_006413309.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-97	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10027549m
Entrez Gene	18030356