PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027582m
Common NameEUTSA_v10027582mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 470aa    MW: 50793.2 Da    PI: 6.1405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027582mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.5e-15291338355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++hn  Er+RR riN+++  L+el+P +      K +Ka++Le A+eY+ksLq
  Thhalv10027582m 291 EMHNLSERKRRGRINERMKALQELVPRS-----NKSDKASMLEDAIEYVKSLQ 338
                      58*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.3E-20286357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.46288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-19291362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-16291342No hitNo description
PfamPF000107.8E-13291338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-16294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
VCACFCMEIR GEDDIVELLW KSGQVVQSSQ SQRPISVPPP ILRGSGSGGG GGVEGNAPLP  60
LPPPPHTPLL DQPEPSHHQS LLIQEDEMVS WLYHTHREDG FYSDLIYPGV ASIPATQPLS  120
SASFAPPPPV DLPSSQILDT RRVANFTNLS RFRGNIFSGG RVEAAGPLVP LPVVSLSTQV  180
GSSLTPSSSA TESCLTPATQ GSENRSTAII GGVSRTFVVP GLEKVVATEI AGTSSSGVSK  240
VEAEPIQVQP ATETRTADDR KGKERQETAD DIEDTKEAPG STSRKRSRAA EMHNLSERKR  300
RGRINERMKA LQELVPRSNK SDKASMLEDA IEYVKSLQMQ LHMMSQNMQQ FMPHMAMGMM  360
GMNRPPFIHF PGIASHMAGP GPSYPAPPYP FPNNPAFDPS RLHLPSQQPD PAPNQPRLPG  420
YLNPYSQFVG LPQMQQPPPP LQNQTTSQLS FSLPSSVKEP EDQENQPTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283300RKRSRAAEMHNLSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027582m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775861e-55AJ577586.1 Arabidopsis thaliana mRNA for putative bHLH127 transcription factor (bHLH127 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412909.20.0transcription factor bHLH119
SwissprotQ9SVU71e-147BH056_ARATH; Putative transcription factor bHLH056
TrEMBLV4MGE50.0V4MGE5_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006412909.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.12e-95bHLH family protein