PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027743m
Common NameEUTSA_v10027743mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 465aa    MW: 50522 Da    PI: 9.1616
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027743mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07144163626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C+++ + G Ck G+ C+F H+
  Thhalv10027743m 144 CKYWKA-GNCKNGELCQFLHS 163
                      ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-4138164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6140163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-6143162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.037143165IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4144163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.0E-40163460IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.6E-4169208IPR001680WD40 repeat
SuperFamilySSF509782.29E-42169217IPR017986WD40-repeat-containing domain
PROSITE profilePS5029418.958176464IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.382176217IPR001680WD40 repeat
PfamPF117151.3E-5191224No hitNo description
PROSITE patternPS006780195209IPR019775WD40 repeat, conserved site
PRINTSPR003207.0E-8195209IPR020472G-protein beta WD-40 repeat
SMARTSM0032091248285IPR001680WD40 repeat
SuperFamilySSF509782.29E-42255460IPR017986WD40-repeat-containing domain
SMARTSM003200.0011293331IPR001680WD40 repeat
PfamPF004005.6E-5297331IPR001680WD40 repeat
PROSITE profilePS5008210.408315340IPR001680WD40 repeat
PROSITE patternPS006780318332IPR019775WD40 repeat, conserved site
PRINTSPR003207.0E-8318332IPR020472G-protein beta WD-40 repeat
SMARTSM003209.1E-5334371IPR001680WD40 repeat
PfamPF004008.5E-4336370IPR001680WD40 repeat
PROSITE profilePS500828.838341370IPR001680WD40 repeat
PRINTSPR003207.0E-8358372IPR020472G-protein beta WD-40 repeat
SMARTSM00320120377418IPR001680WD40 repeat
SMARTSM003202.6421458IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDEATKLESV VQSAKVSCFL NVYSMNHKAL RRYSNGRTFG VERQQDFAAD IAPRRPYVPY  60
ENRVNKGPNK RSRNLVWTAS EGNRPRKNDN TNESVKSPVS GTGHCVSNQP RKNGANGPRS  120
SSVSGTRGLG SRDNGSPKSR DCVCKYWKAG NCKNGELCQF LHSWSSLPGL VMVATLEGHK  180
KDLKGIALPV GSDKLFSASS DGTLRIWDCH TGQCVHTINL QAEAGSLISE GRWVFLGLPN  240
AVKAFNVQTS KDLHLNGVVG QVHAMTVGNG MLFAGTSSGS ISVWKATETE SDPFTYLTSL  300
EGHHSGQVTC FIVGGQRLYS GSVDKTIKVW DLNTLQCTMT LRQHSDTITS LLCWDQYLFS  360
SSLDGTIKIW ACSDNGILKV TNTRRQEQSV HALCGINDGD GKPIMFSSYQ NGTVSIVDLP  420
SFEERGKMFS THTIGTITIG PEGLLFSGDK SGKLRVWNLA GTKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-1917546210325Tako8
6g6n_A5e-1917546210325Tako8
6g6n_B5e-1917546210325Tako8
6g6n_C5e-1917546210325Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027743m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405507.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLV4L9700.0V4L970_EUTSA; Uncharacterized protein
STRINGXP_006405507.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein