PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027745m
Common NameEUTSA_v10027745mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 464aa    MW: 50740.2 Da    PI: 8.7948
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027745mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.1e-08142162526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+++ + G Ck+G++C+F H+
  Thhalv10027745m 142 VCKYWKA-GNCKRGEQCQFLHS 162
                      5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.1E-7135157IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6137163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6138162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61142164IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5142162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.107.5E-39158459IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0033168207IPR001680WD40 repeat
SuperFamilySSF509784.07E-41169216IPR017986WD40-repeat-containing domain
PfamPF004000.0082173207IPR001680WD40 repeat
PROSITE profilePS5008212.948175216IPR001680WD40 repeat
PROSITE profilePS5029418.668175463IPR017986WD40-repeat-containing domain
PROSITE patternPS006780194208IPR019775WD40 repeat, conserved site
PRINTSPR003201.5E-7194208IPR020472G-protein beta WD-40 repeat
SMARTSM0032072247284IPR001680WD40 repeat
SuperFamilySSF509784.07E-41254459IPR017986WD40-repeat-containing domain
SMARTSM003200.0011292330IPR001680WD40 repeat
PfamPF004005.6E-5296330IPR001680WD40 repeat
PROSITE profilePS5008210.475314339IPR001680WD40 repeat
PROSITE patternPS006780317331IPR019775WD40 repeat, conserved site
PRINTSPR003201.5E-7317331IPR020472G-protein beta WD-40 repeat
SMARTSM003204.6E-5333370IPR001680WD40 repeat
PfamPF004000.0034335369IPR001680WD40 repeat
PROSITE profilePS500828.938340369IPR001680WD40 repeat
PRINTSPR003201.5E-7357371IPR020472G-protein beta WD-40 repeat
SMARTSM003202.1420457IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDEATKLEIV VQSAKVSCFL NVYSMNHKAP RRYSNGRNFG VERQHDFAAD IVPRRPYVPY  60
ENRVNRGPNK WSRNLVWTAS EGNRPRKNDN TYGSVKSPAS GTGHSVSNQP RKYGSNGPRS  120
SSIDTRGWGS RDNGSPTYKD CVCKYWKAGN CKRGEQCQFL HSWCSFPGLA MVASLEGHKK  180
DLKGIALPVG SDKLFSASSD GTLQIWDCHT GRSVHTINLQ AEAGSLISEG PWVFLGLPNA  240
VKAFNVQTSI DLHLKGVVGQ VHAMTVGNGM LFAGTSSGSI SVWKATDNES DPFTYLTSLE  300
GHHSGQVTCF IVGGQRLYSG SVDKTIKVWD LNTLECTMTL RQHTDTVTSL LCWDQYLFSS  360
SLDGTIKVWA CSENGSLKVT NMRRQEQSVH ALCGINDAEG KPIMFCSYQN GTVSIVDLPS  420
FEERGKMFST HTVGTITIGP EGLLFSGDKS GKLRVWNLAG TKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-1717445810320Tako8
6g6n_A3e-1717445810320Tako8
6g6n_B3e-1717445810320Tako8
6g6n_C3e-1717445810320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027745m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405417.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLV4L8X30.0V4L8X3_EUTSA; Uncharacterized protein
STRINGXP_006405417.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein