PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027863m
Common NameEUTSA_v10027863mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 302aa    MW: 34277 Da    PI: 6.0069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027863mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.83.4e-173988255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r +h+e E+rRR++iN++f+ L +++P++    ++K +Ka+ L +++eYI+ Lq
  Thhalv10027863m 39 RSKHSETEQRRRSKINERFQSLMDIIPQN----DQKRDKASFLLEVIEYIQFLQ 88
                     899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.78E-143592No hitNo description
Gene3DG3DSA:4.10.280.101.0E-2235107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1936115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.6023787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-143988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-124393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNSPDLDEQL EADVYSNLPS HQNDSSTGMM TRRNRSSLRS KHSETEQRRR SKINERFQSL  60
MDIIPQNDQK RDKASFLLEV IEYIQFLQEK VQMYEGSHQM WYQAPTKLIP WRNNHDPVGE  120
VSDHPDIVKC FPSNDKVAAS SGLLSDMQNP VDLYVDDSAA TTKILEHSHV SAVSSYEPTE  180
TPLQFVQHDF WQPRPSCGSN DRNKKELLNS DEKTSASLSN VCSQRVLHNL TEALKSSGVN  240
MSETLISVKL NLRKRADRAY SASAFASEDH CNSITDEEGD SPAETRSICK ELDQSQKRIR  300
R*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00534DAPTransfer from AT5G38860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027863m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405688.10.0transcription factor BIM3 isoform X2
SwissprotQ9FMB61e-157BIM3_ARATH; Transcription factor BIM3
TrEMBLV4NL630.0V4NL63_EUTSA; Uncharacterized protein
STRINGXP_006405688.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161311114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.11e-160BES1-interacting Myc-like protein 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]