PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10027890m

Common Name

EUTSA_v10027890mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GeBP

Protein Properties

Length: 261aa MW: 29577.3 Da PI: 9.6453

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10027890m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	95.3	6.2e-30	52	143	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 ++r+w+eeDe+++L+Gl+d+ +k+g++p +d+dafy+f+ +si k+sk+ql++Kir+LKkKf +++k+++g+++ d+++ ls++iW Thhalv10027890m 52 SNRIWNEEDELTVLKGLVDYLDKEGVQPNSDWDAFYHFLGDSIAEKFSKQQLLSKIRKLKKKFLLHMEKTSQGDDMLC----DSEAIRLSRMIW 141 78*****************************************************************999999765....6788****** PP DUF573 97 gs 98 g+ Thhalv10027890m 142 GQ 143 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.2E-22	53	142	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MAKPKQLDFS DDNSPSTRKS PRKRASNPSP ASETTKKKKK KKKTKKSAPP VSNRIWNEED 60 ELTVLKGLVD YLDKEGVQPN SDWDAFYHFL GDSIAEKFSK QQLLSKIRKL KKKFLLHMEK 120 TSQGDDMLCD SEAIRLSRMI WGQNGSESAN NQSKSFNQDE ALKDNDQVAN AEANENVAAL 180 GDKNTDVDES GTLRDAFESI MSRWLSDHQK KVQLENLMNL EAGKRKELSD EWKELCAEEA 240 RLNIKKFKYS AKFAEAAAKR *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	42	RKRASNPSPASETTKKKKKKKK
2	36	42	KKKKKKK
3	36	45	KKKKKKKTKK
4	37	45	KKKKKKTKK

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:21875893, ECO:0000269\|PubMed:29192025, ECO:0000305\|PubMed:18162594}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00061	PBM	Transfer from AT4G00270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10027890m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269\|PubMed:12535344}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006405926.1	0.0	GLABROUS1 enhancer-binding protein
Refseq	XP_006405927.1	0.0	GLABROUS1 enhancer-binding protein
Swissprot	Q9ASZ1	2e-71	STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBL	V4LAC3	0.0	V4LAC3_EUTSA; Uncharacterized protein
STRING	XP_006405926.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	2e-67	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Thhalv10027890m
Entrez Gene	18022700

Publications ? help Back to Top
Nietzsche M,Schießl I,Börnke F The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Front Plant Sci, 2014. 5: p. 54 [PMID:24600465] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]