PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027901m
Common NameEUTSA_v10027901mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 244aa    MW: 28748.2 Da    PI: 3.8895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027901mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.73.8e-2281441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lp+GfrF+Ptd e+ +++L++k+ g+++++  v +e+ di++  P+dLp   + +ek+wyf++++ k + t   ++ + ++ +W +  ++++vl
  Thhalv10027901m   8 LPVGFRFRPTDCEISNYFLTRKALGQPMNTRIVPEEChDIFSRRPRDLPG--YPREKHWYFYCRKLKDQVTT--TTNTSSHNIWTQIEEETDVL 97 
                      79****************************77788889***********4..35789*******99988764..333445689*********** PP

              NAM  94 sk..kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128
                      ++  +++lvg+k+++++             +++++ k +W+m+e +l
  Thhalv10027901m  98 DAknNDALVGIKRSFTLVendeesddiyLSDEEEPPKYNWFMDEISL 144
                      98656667**********555544444337788888*******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-277161IPR003441NAC domain
PROSITE profilePS5100529.1578161IPR003441NAC domain
PfamPF023657.5E-139143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEPKLRALPV GFRFRPTDCE ISNYFLTRKA LGQPMNTRIV PEECHDIFSR RPRDLPGYPR  60
EKHWYFYCRK LKDQVTTTTN TSSHNIWTQI EEETDVLDAK NNDALVGIKR SFTLVENDEE  120
SDDIYLSDEE EPPKYNWFMD EISLPLTVAD TDWVFCHVFR KKIKPETVDL PFIESGSESE  180
DEEEEEEQEQ EEQEEQEQEQ EEEEEEEEEE EEQEEVEESV SAESLDLFRE QDENVLPPSP  240
SPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027901m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405394.11e-175NAC domain-containing protein 104
TrEMBLV4LWE11e-174V4LWE1_EUTSA; Uncharacterized protein
STRINGXP_006405394.11e-175(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-89NAC family protein