PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028002m
Common NameEUTSA_v10028002mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 98aa    MW: 11327.3 Da    PI: 10.3515
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028002mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.5e-1813901694
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                      +lpk+  +++ +   +  +++l+d++gr+W+  l  rk+sg++++t+ W++F++ang k+g ++vFkl+++++  l++
  Thhalv10028002m 13 CYLPKNISRSNILT-GRFDEIILMDKHGRKWTSGLYCRKSSGEVYITRVWRSFCEANGQKVGCSFVFKLVSNRTSPLLI 90
                     58999999999444.34459***************7799999***************************9875555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.039194IPR003340B3 DNA binding domain
SMARTSM010199.3E-14295IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-151192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-151291IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-171390IPR003340B3 DNA binding domain
CDDcd100171.11E-131487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MCLQKKRRIW NLCYLPKNIS RSNILTGRFD EIILMDKHGR KWTSGLYCRK SSGEVYITRV  60
WRSFCEANGQ KVGCSFVFKL VSNRTSPLLI MTSEETT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028002m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014359.12e-53transcriptional regulator ATRX
SwissprotF4KFT68e-18REML3_ARATH; B3 domain-containing protein REM-like 3
TrEMBLV4M4X81e-65V4M4X8_EUTSA; Uncharacterized protein
STRINGXP_006405900.12e-66(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.13e-20B3 family protein