PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028026m
Common NameEUTSA_v10028026mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 145aa    MW: 17228.9 Da    PI: 10.2661
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028026mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind45.42.2e-141295295
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT.--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkh.snfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95
                     F +kly+i++d++++++isw +n+nsf+v+d e f +++Lp + +  + f+ F   L + gF+++ +            eF h+ F +g  ell 
  Thhalv10028026m 12 FYTKLYQIVDDPSFNRIISWGKNNNSFIVWDVEGFRRRILPMFAEFgRDFSKFESELFIHGFRRIGQY-----------EFGHEDFVRGVPELLM 95
                     99**************************************986554257999**********998764...........5777777777766654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-19695IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-168101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-191094IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-51235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-151295IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-56476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MFQRFPNESS SFYTKLYQIV DDPSFNRIIS WGKNNNSFIV WDVEGFRRRI LPMFAEFGRD  60
FSKFESELFI HGFRRIGQYE FGHEDFVRGV PELLMKKMSV KSRTEGMEKF EAKLKPRRII  120
FKPKKAIAKE EVAKVEDLFQ QLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028026m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405569.11e-101heat stress transcription factor C-1a
TrEMBLV4LWY81e-100V4LWY8_EUTSA; Uncharacterized protein
STRINGXP_006405569.11e-100(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.14e-27Winged helix-turn-helix transcription repressor DNA-binding