PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028027m
Common NameEUTSA_v10028027mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 134aa    MW: 15381 Da    PI: 10.6459
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028027mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind55.41.6e-17111041101
                      HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST.T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk.hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      +F  +ly+i++d++ + +isws+++nsf+v+d e++  ++L+k  +  +n+  F+ +L+ YgFkkv   +          e+ h+ F +g+ +l
  Thhalv10028027m  11 TFYIRLYQIVDDPSSDAIISWSKSNNSFIVWDLENLFGEILSKSVEfGRNLLQFISKLQSYGFKKVMGADP--------LEYGHDGFVRGQPQL 96 
                      5899****************************9999999**996652468999**************9996........6************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  94 lekikrkk 101
                      l+k+ + +
  Thhalv10028027m  97 LKKVWMDR 104
                      **986554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-20798IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.62E-20799IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.1E-228103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-1612100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-81235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-86476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MVHSFPSGLP TFYIRLYQIV DDPSSDAIIS WSKSNNSFIV WDLENLFGEI LSKSVEFGRN  60
LLQFISKLQS YGFKKVMGAD PLEYGHDGFV RGQPQLLKKV WMDRKKRLAP KRAKAKVRKA  120
RAKVEHLLQD LRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-17610014117Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028027m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428835.11e-34PREDICTED: heat stress transcription factor A-4a-like
TrEMBLV4M4631e-92V4M463_EUTSA; Uncharacterized protein
STRINGXP_006405570.12e-93(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-29Winged helix-turn-helix transcription repressor DNA-binding