PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028050m
Common NameEUTSA_v10028050mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 504aa    MW: 56990.1 Da    PI: 9.9607
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028050mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-1613961097
                     HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                      + s+ l++p  f++++  g ++++ +t +l++  s   W+vk+  +  +++  lt+GWk+F+ a++L++gD+++F++++ ++f  +v ++
  Thhalv10028050m 13 GFHSH-LTIPVAFFSKYiqGTNEQKMTTAKLRSdVSKTAWKVKI--EEDGQK--LTDGWKQFALAHDLRTGDILIFRHEKGMSF--HVEIL 96
                     45555.************97778888899999878889******..777766..***********************9888888..88876 PP
2B371.21.3e-22138225595
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       + +++l+ + l +p +fa+++g+ ++++ +++l++e+grsW++ l  +kk g++++++GW++F++angL++gD ++F l +r ++++v++
  Thhalv10028050m 138 NVAPSTLSDDALNIPMSFARANGLGTRCG-EIVLMNEKGRSWNLAL-KQKKCGKIYIRGGWRSFCSANGLNVGDLFTFNLFQR-GKTPVLR 225
                      56788999999***********9999887.****************.4677777*************************9885.4446655 PP
3B373.82.1e-23271361596
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       +++ +l+ + l+lp kf +e+g++ +++ +++l++e+g sW+++l+ +++s++ +++++GW++F++angL++gD+++Fkl++ ++++l++++
  Thhalv10028050m 271 KISPATLRYDSLRLPVKFWRENGLNRRCG-EIVLMNEKGTSWTLNLKQKRSSCGtMFIRRGWRSFCRANGLRAGDSITFKLIQ-RGGNLFLRL 361
                      55677889999**************9887.****************998888777999************************9.555566665 PP
4B344.92.1e-14415492179
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDf 79 
                      f++ ++++++l++++l+lp +f++ hg+++e  +++ l d++g +W  +l+   k++++ l +GWk+F kan L  egD+
  Thhalv10028050m 415 FLTLTLKPYNLTKSNLYLPVTFTKFHGINEE--TKMHLLDKHGVKWYTNLRSAEKGKKIRLVGGWKDFFKANCLIwEGDT 492
                      66778899******************99954..58***************99999999****************988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-203101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182399IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-183106IPR015300DNA-binding pseudobarrel domain
CDDcd100174.70E-15496No hitNo description
SMARTSM010192.9E-20699IPR003340B3 DNA binding domain
PfamPF023621.2E-111595IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-22131226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-20132227IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.806134229IPR003340B3 DNA binding domain
SMARTSM010192.4E-25135230IPR003340B3 DNA binding domain
PfamPF023629.6E-22138225IPR003340B3 DNA binding domain
CDDcd100171.04E-18142226No hitNo description
Gene3DG3DSA:2.40.330.108.0E-22259354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20265365IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.511267365IPR003340B3 DNA binding domain
CDDcd100171.54E-22267361No hitNo description
SMARTSM010197.6E-29268365IPR003340B3 DNA binding domain
PfamPF023625.8E-22270361IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-14407486IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-15411487IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-13415502IPR003340B3 DNA binding domain
PROSITE profilePS5086310.87415503IPR003340B3 DNA binding domain
CDDcd100171.09E-10415496No hitNo description
PfamPF023623.0E-12415492IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MVNKHFFKPI LPGFHSHLTI PVAFFSKYIQ GTNEQKMTTA KLRSDVSKTA WKVKIEEDGQ  60
KLTDGWKQFA LAHDLRTGDI LIFRHEKGMS FHVEILGPSG CEVQYESCSD DKSSLVKKNP  120
RKETKSSSLV DHSRFVANVA PSTLSDDALN IPMSFARANG LGTRCGEIVL MNEKGRSWNL  180
ALKQKKCGKI YIRGGWRSFC SANGLNVGDL FTFNLFQRGK TPVLRLSTTE SGEEEESSEE  240
KTQRKKKVEK NPKTEAGSSS SSLDPSCFVA KISPATLRYD SLRLPVKFWR ENGLNRRCGE  300
IVLMNEKGTS WTLNLKQKRS SCGTMFIRRG WRSFCRANGL RAGDSITFKL IQRGGNLFLR  360
LTSTESKEEC SEGDEIESLS TESESDHEEM DQDEKSFKNP RSLWKASSSA SQNLFLTLTL  420
KPYNLTKSNL YLPVTFTKFH GINEETKMHL LDKHGVKWYT NLRSAEKGKK IRLVGGWKDF  480
FKANCLIWEG DTRCVLQFCS KVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028050m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014605.10.0B3 domain-containing protein REM14
SwissprotQ8GYM40.0REM14_ARATH; B3 domain-containing protein REM14
TrEMBLV4LAF60.0V4LAF6_EUTSA; Uncharacterized protein
STRINGXP_006405957.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.10.0B3 family protein