PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10028056m

Common Name

EUTSA_v10028056mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

NF-YC

Protein Properties

Length: 215aa MW: 24557.6 Da PI: 6.1585

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10028056m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	47.5	4e-15	50	144	2	100
NF-YC 2 lksfwekqiekatdfk.....nhelPlarikkilkadedvk.....misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 ++ fw+ ++e++++f +lPlarik+++k+d++vk +s+eaPv+++ka ++ ++r+t++ +dia+av + Thhalv10028056m 50 MEIFWAWKREETENFTgfpvsCDRLPLARIKRVMKSDPQVKsvnfqTVSSEAPVIFAKA--------------YTQLSSRQTIRTCDIADAVRN 129 78899999999998633333579************97322325799****9..............478899*********** PP NF-YC 86 tdifdflvdivprde 100 ++ +d+l v d+ Thhalv10028056m 130 SELHDYLDGLVNFDK 144 *****98888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.29E-10	57	136	IPR009072	Histone-fold
Pfam	PF00808	3.2E-5	73	114	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-9	73	112	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MKRPITTTSS PRDSSAEATL TRMDPVLHVT NEAWSFSPEN RHRNALQQNM EIFWAWKREE 60 TENFTGFPVS CDRLPLARIK RVMKSDPQVK SVNFQTVSSE APVIFAKAYT QLSSRQTIRT 120 CDIADAVRNS ELHDYLDGLV NFDKRSISHQ AVPERALHQQ MFSPANMNLS GTEAPTDMDQ 180 IQKDNLMADR FINTEEFELN HNLHVVFFEL LSAQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10028056m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872129.1	7e-36	nuclear transcription factor Y subunit C-10 isoform X1
TrEMBL	V4NLG3	1e-159	V4NLG3_EUTSA; Uncharacterized protein
STRING	XP_006405803.1	1e-160	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19106	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38140.1	4e-28	nuclear factor Y, subunit C12

Link Out ? help Back to Top
Phytozome	Thhalv10028056m
Entrez Gene	18022778