PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028104m
Common NameEUTSA_v10028104mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 346aa    MW: 40039.9 Da    PI: 7.0804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028104mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.91.8e-10312138128
              NAM  38 diykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr..atksgy..Wkatgkdkevlsk.kgelvglkktLvfy........kgr 112
                      ++y  ePw L+++ ++  +e+ewy+F++r + ++     gk+++r  +t+sg   W+a+ k++++++k +ge +g+k+tL+f         k  
  Thhalv10028104m   3 NVYAKEPWLLDHTKDTffNEDEWYYFVTRTQVSEknidCGKKAKRkiITDSGCwgWNAKSKKEDITDKkTGEIIGTKRTLTFGkskkkkkkK-- 94 
                      78999*****84322244888******998877744444667777456999*95667999999**99877889*********9554432221.. PP

              NAM 113 apkge...............ktdWvmheyrl 128
                          +                ++W+m eyrl
  Thhalv10028104m  95 ----QktedgaascaivpgsDSRWIMTEYRL 121
                      ....123344455555555578899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.3071141IPR003441NAC domain
SuperFamilySSF1019413.66E-163139IPR003441NAC domain
PfamPF023652.0E-723121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MKNVYAKEPW LLDHTKDTFF NEDEWYYFVT RTQVSEKNID CGKKAKRKII TDSGCWGWNA  60
KSKKEDITDK KTGEIIGTKR TLTFGKSKKK KKKKQKTEDG AASCAIVPGS DSRWIMTEYR  120
LKEAKGDKNF QKLVICKIRE IKTKKNHHKC FSNLSQQPVN TGHESVLASS SSHQQKQLIN  180
EVHRRDPYIP SIGSENNDQV IFCKIQENMK DDHDAHHPEF VLASSLEQKP INEAHHHHHH  240
LEITLTGLQN NDQVMRTCLT EDESATVDER NKEYNQLHID APLACLGSEQ EPEEEETDRY  300
QCLEDGVVLI YYRPPWMDQD LLDQYASLRP KNYSKKYTNL GDEDL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028104m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405709.10.0NAC domain-containing protein 96
TrEMBLV4LX990.0V4LX99_EUTSA; Uncharacterized protein
STRINGXP_006405709.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.13e-15NAC domain containing protein 88