PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028117m
Common NameEUTSA_v10028117mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 441aa    MW: 49853.9 Da    PI: 5.8512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028117mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-15232277248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+WT  Ed +l+++v+ +G++ W  Ia+++g gR +kqc++rw+++l
  Thhalv10028117m 232 GKWTLLEDTKLKELVEIYGTKKWGMIAKMVG-GRLGKQCRERWHNHL 277
                      89*****************************.*************97 PP
2Myb_DNA-binding55.91e-17284326246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT+eEd++l++a+k  G++ W+ Ia+ ++ gR+++++k++w++
  Thhalv10028117m 284 DAWTKEEDQILIEAHKVVGNK-WTEIAQQLP-GRSENSIKNHWNS 326
                      58*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.106226281IPR017930Myb domain
SuperFamilySSF466892.94E-30229324IPR009057Homeodomain-like
SMARTSM007174.4E-15230279IPR001005SANT/Myb domain
PfamPF002499.8E-15231277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-20232281IPR009057Homeodomain-like
CDDcd001677.18E-14233277No hitNo description
PROSITE profilePS5129419.313282332IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-22282330IPR009057Homeodomain-like
SMARTSM007171.9E-16282330IPR001005SANT/Myb domain
CDDcd001674.74E-13285325No hitNo description
PfamPF002493.5E-16285326IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDFSMNISNK DFIINTAHHS LNDDFSYVHK NYPNFFDDNS GQVFLSGWSH QPILTEFSDH  60
FHQNLISLIS NQNNDSLNQT LVTTQNLPVS NLPTVEIPSK YPFIGIDSYS GIDNSEEPMN  120
NIANNNTNFM TYNTAISEEP RGIFSNFHDF QGKIMWDDTI HNNGLINSGY GPTFNKFMVE  180
SHPIDFPVNN GIKSTTREDM SGGPVMIQAN QEKNKKVVMK NKHLKKANIT TGKWTLLEDT  240
KLKELVEIYG TKKWGMIAKM VGGRLGKQCR ERWHNHLRPN IKMDAWTKEE DQILIEAHKV  300
VGNKWTEIAQ QLPGRSENSI KNHWNSTIRR MNLMKAKQNH ENANNILENY IGGVTINNDS  360
LNAIKTAGIV ENTKDDEKRN LSLGVTTQPT ALVVDESSTS TSVTVPELAT ISWDDYIDQL  420
CESVDDPLMF MQGLENGLVN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-432283304106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028117m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405493.21e-167transcription factor MYB115
TrEMBLV4NKM80.0V4NKM8_EUTSA; Uncharacterized protein
STRINGXP_006405493.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.15e-75myb domain protein 115