PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10028136m

Common Name

EUTSA_v10028136mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Protein Properties

Length: 287aa MW: 32710 Da PI: 8.3653

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10028136m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.9	4.7e-10	3	55	36	94
EEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 36 ltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 l+l++ s r+Wevkl ++ +r ++ GW++F +a+ L++ ++vF++dg++ f +v Thhalv10028136m 3 LKLTSdASDRTWEVKL--ING-QR--FSHGWEDFSNAHCLRDDHVLVFRHDGDMLF--HV 55 555554899*****..333.34..899******************9998777..44 PP
2	B3	41.4	2.6e-13	89	171	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f++v++++++l+ +++++ ++fa e+g+k+++ ++tl d k+ ++++++++kGW +F+ an+Lk+gD++ F+++g +++++++ Thhalv10028136m 89 FLTVTLKPYMLTYKQIRVRRRFAIENGMKEAG--KITLVD--------KH----GDQGFYISKGWIGFCAANELKAGDTFKFEFVGGEGKTPML 168 78889999****************999777..699999........44....67889**********************999*9 PP EEE CS B3 95 kvf 97 k++ Thhalv10028136m 169 KFC 171 998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.392	1	61	IPR003340	B3 DNA binding domain
SMART	SM01019	0.041	1	61	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	9.9E-11	3	58	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-11	8	65	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.24E-9	8	56	No hit	No description
Gene3D	G3DSA:2.40.330.10	9.1E-12	86	171	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.87E-15	87	171	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.70E-12	88	164	No hit	No description
SMART	SM01019	2.4E-17	89	174	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-12	89	171	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.543	133	173	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MKLKLTSDAS DRTWEVKLIN GQRFSHGWED FSNAHCLRDD HVLVFRHDGD MLFHVTPTGR 60 SFSQKKQQCV SSSEEDDNDD DEGMKQSRFL TVTLKPYMLT YKQIRVRRRF AIENGMKEAG 120 KITLVDKHGD QGFYISKGWI GFCAANELKA GDTFKFEFVG GEGKTPMLKF CWTVQASRDK 180 DKDGQEDNET RVLKRARVST EEGSSRCTQA SNKSRAEPEN LQRKPPLQSC SVSEQLAKVK 240 QSIVYTLTGI RQFRSELEIK EQNLEASLKE LDVLGEKVLE INKILK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10028136m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014544.1	0.0	LOW QUALITY PROTEIN: B3 domain-containing protein REM2
Swissprot	Q8VZQ9	2e-73	REM3_ARATH; B3 domain-containing protein REM3
TrEMBL	V4LAH6	0.0	V4LAH6_EUTSA; Uncharacterized protein
STRING	XP_006405977.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28126	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31620.1	4e-73	B3 family protein

Link Out ? help Back to Top
Phytozome	Thhalv10028136m
Entrez Gene	18022898

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]