PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028155m
Common NameEUTSA_v10028155mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 257aa    MW: 29478.2 Da    PI: 10.2933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028155mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-162166147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ 
  Thhalv10028155m 21 RGHWKPSEDFKLQELVAVFGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 66
                     899*****************************.***********996 PP
2Myb_DNA-binding56.94.8e-1873117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++++ eE+e+l+ a++++G++ W++Ia+ ++ gRt++ +k++w+ +
  Thhalv10028155m  73 KKAFSDEEEEKLLAAHREFGNK-WSLIAKLFP-GRTDNAVKNHWHVL 117
                      679*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3711667IPR017930Myb domain
SMARTSM007176.1E-132069IPR001005SANT/Myb domain
PfamPF002491.0E-152166IPR001005SANT/Myb domain
SuperFamilySSF466892.27E-2821118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-252274IPR009057Homeodomain-like
CDDcd001673.32E-112465No hitNo description
PROSITE profilePS5129426.81668122IPR017930Myb domain
SMARTSM007174.3E-1672120IPR001005SANT/Myb domain
PfamPF002491.2E-1573117IPR001005SANT/Myb domain
CDDcd001671.12E-1175118No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2275122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MHQESKNKKK KKQSFSKVCS RGHWKPSEDF KLQELVAVFG PQNWNHIAEK MQGRTGKSCR  60
LRWFNQLDPR INKKAFSDEE EEKLLAAHRE FGNKWSLIAK LFPGRTDNAV KNHWHVLMAR  120
KLRKQSSSYS RSRKRHTPSP DVITSLNLQQ TFNLFPGSVS EESTEFKNYS WKMLKEETTN  180
HKAQEDYCSS HHHHHFSTFP ADSLALLTPH VSISQPSSSS PSSSLSSSEA ENTMVARYYE  240
ITKPPRFIDF LGVGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-31211224105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-312012226128MYB TRANSFORMING PROTEIN
1mse_C3e-31211224105C-Myb DNA-Binding Domain
1msf_C3e-31211224105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028155m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405602.20.0LOW QUALITY PROTEIN: transcription factor MYB54
SwissprotQ9SEZ44e-64MY105_ARATH; Transcription factor MYB105
TrEMBLV4L9I90.0V4L9I9_EUTSA; Uncharacterized protein
STRINGXP_006405602.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-87myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]