PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028215m
Common NameEUTSA_v10028215mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GeBP
Protein Properties Length: 316aa    MW: 36289.6 Da    PI: 6.6566
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028215mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57384.81.2e-26103202297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgke.psfskehdqkife 90 
                       f+r++seeD ++lLqG++df+++ g +p++d d+fy fvk++is+++s++q+++K+r+LK++f k vk+     k g++ ++  k+ dq +f+
  Thhalv10028215m 103 SFERVFSEEDSVALLQGFLDFNSTSG-DPFKDKDRFYGFVKDRISANASRNQVTDKVRKLKDRFLKTVKNsienGKGGEDtIVYPKDVDQRSFD 195
                      699******************99999.****************************************99987664444441678999******* PP

           DUF573  91 lskkiWg 97 
                      l +kiWg
  Thhalv10028215m 196 LWRKIWG 202
                      ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-22104202IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAPKKGKKTA NPRLVSSKED EEEEESHSFK PSHTDAKDTH VEKSESEEDI VDVEEEHEQE  60
PKPEISHPKS STAKRSLEKA DHDEVRKKKR SKTEKTEDKK QPSFERVFSE EDSVALLQGF  120
LDFNSTSGDP FKDKDRFYGF VKDRISANAS RNQVTDKVRK LKDRFLKTVK NSIENGKGGE  180
DTIVYPKDVD QRSFDLWRKI WGREGVFAHK SLTNLQGNIK KEAEKAEMNV VRSSPPLDFG  240
REIVFFLKEE NITKFALDES SVLERWNMSA DEQKKRALEE KLKKITEMQL ELCVDKFSIV  300
SKAAELIFKA NNASSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028215m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4LAI60.0V4LAI6_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405987.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.16e-48DNA-binding storekeeper protein-related transcriptional regulator