PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028218m
Common NameEUTSA_v10028218mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GeBP
Protein Properties Length: 231aa    MW: 26500.5 Da    PI: 9.5703
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028218mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57366.55.9e-2121106497
           DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                      ++lw ++De +lLqG idf    g  p+ d ++f+++v++sisf++s+++++eK++rLK K+ ++++k   g   sf+k+hd+ +f  s+ +Wg
  Thhalv10028218m  21 ESLWKKHDEKLLLQGAIDF----GECPFGDKEGFHRQVEGSISFEASTNEIIEKLKRLKMKYLDNKRK---GV-ESFKKAHDEFCFLASNHLWG 106
                      689****************....99****************************************999...54.59*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-1522106IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
GPSQGTSLRV KQEEKNPPIY ESLWKKHDEK LLLQGAIDFG ECPFGDKEGF HRQVEGSISF  60
EASTNEIIEK LKRLKMKYLD NKRKGVESFK KAHDEFCFLA SNHLWGPGGI YAKEKKNKTS  120
KAKKKNEPSK GKKKNETSKV KKKEEVVKEE EEEDKKVGWV LAEDWFEKSY VVGSIAGSGI  180
DEEAVKAGWR MAPMEEKKKI EEEWRALQLK ELSFLSLKME FLLEVTKMLK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028218m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405843.21e-163probable transcription factor At1g61730
TrEMBLV4NLJ81e-162V4NLJ8_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405843.11e-163(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.16e-25DNA-binding storekeeper protein-related transcriptional regulator