PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028330m
Common NameEUTSA_v10028330mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 368aa    MW: 41647 Da    PI: 9.7338
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028330mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.5e-13311042298
                      H.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  22 faeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      f++++  g ++++ +t +l++  s   W+vk+  +  +++  lt+GWk+F+ a++L+ gD+++F++++++ f  +vk++ 
  Thhalv10028330m  31 FFSKYiqGTNEQKMTTAKLRSdVSKIAWKVKI--EEDGQK--LTDGWKQFALAHDLRIGDILIFRHEKHMAF--HVKILG 104
                      56666776677777889999868889******..777766..***********************9988999..999875 PP
2B370.12.9e-22156246797
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++ +l+ + l+lp k  +e+g++++++ +++l++e+g sW+++l+ +++ ++  +++++GW++F++angL++gD+++Fkl++ ++++lv+++ 
  Thhalv10028330m 156 SPATLRYDSLRLPVKISRENGLDTRCG-EIVLMNEKGTSWKLNLKQKRSCESgtMYIRRGWRSFCSANGLRAGDSITFKLIQ-RGGNLVLRLS 246
                      566778899**************9987.****************8877766688***************************9.5666777765 PP
3B335.42e-112953652999
                      -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      k++ ++++ l d++g +W  +l+   k++++ l +GWk+F kan +k  + +++kl+++ ++++ +++++k
  Thhalv10028330m 295 KSNLETKMHLLDKNGVKWYTNLRSAEKGKQIRLVGGWKDFFKANCVKIDEPILLKLIWEGDTSCILQFCSK 365
                      2336679***************99999999*****************************999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.53E-153113IPR015300DNA-binding pseudobarrel domain
CDDcd100177.15E-124103No hitNo description
SMARTSM010191.1E-156106IPR003340B3 DNA binding domain
PROSITE profilePS5086310.81414106IPR003340B3 DNA binding domain
PfamPF023624.6E-932102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1740118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-20143244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-18149251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.186150249IPR003340B3 DNA binding domain
SMARTSM010191.7E-27151249IPR003340B3 DNA binding domain
PfamPF023621.2E-20156246IPR003340B3 DNA binding domain
CDDcd100173.41E-19159245No hitNo description
SMARTSM010195.3E-8271366IPR003340B3 DNA binding domain
CDDcd100175.07E-7273363No hitNo description
SuperFamilySSF1019361.12E-11279359IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-10293365IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-8295363IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.938304366IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVNKHFFKPI LPGFHSHLVL SVFLYDSCIA FFSKYIQGTN EQKMTTAKLR SDVSKIAWKV  60
KIEEDGQKLT DGWKQFALAH DLRIGDILIF RHEKHMAFHV KILGPSGCEV QYESCLDDKS  120
NLEKTQRKKK VEKNPKTEAG SSSSSLDPSC YVANISPATL RYDSLRLPVK ISRENGLDTR  180
CGEIVLMNEK GTSWKLNLKQ KRSCESGTMY IRRGWRSFCS ANGLRAGDSI TFKLIQRGGN  240
LVLRLSSTES EEACPEGDEI ESLSTKSEKS IWKASSSESQ NRLLTLTLKP YNLTKSNLET  300
KMHLLDKNGV KWYTNLRSAE KGKQIRLVGG WKDFFKANCV KIDEPILLKL IWEGDTSCIL  360
QFCSKVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028330m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014115.11e-171putative B3 domain-containing protein REM15 isoform X1
SwissprotQ8GYM41e-101REM14_ARATH; B3 domain-containing protein REM14
TrEMBLV4M5280.0V4M528_EUTSA; Uncharacterized protein
STRINGXP_006405950.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-103B3 family protein