PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028345m
Common NameEUTSA_v10028345mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 178aa    MW: 20611.5 Da    PI: 10.4425
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028345mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.19.6e-08310738128
              NAM  38 diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy................kgra 113
                      ++y  ePw L+++ ++  +e+ewy+F++r + ++++   ++++k    +++ k+++  +k+g+ +g+k+tL+f                 +   
  Thhalv10028345m   3 NVYAKEPWLLDHTKDTffNEDEWYYFVTRTQVSEKNIDCRKKAK----RKSKKEESTDRKTGNIIGTKRTLTFGksnnnkkkqktedgaaSCAI 92 
                      78999*****84322244888********999887766666555....4555555555668899*********966555443333222111233 PP

              NAM 114 pkgektdWvmheyrl 128
                       +g++++W+m eyrl
  Thhalv10028345m  93 VSGSNSRWTMTEYRL 107
                      455699999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.6531127IPR003441NAC domain
SuperFamilySSF1019414.71E-133125IPR003441NAC domain
PfamPF023656.0E-618107IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKNVYAKEPW LLDHTKDTFF NEDEWYYFVT RTQVSEKNID CRKKAKRKSK KEESTDRKTG  60
NIIGTKRTLT FGKSNNNKKK QKTEDGAASC AIVSGSNSRW TMTEYRLKEL KEDKNFQKLV  120
LCKIREIKNK KSHHKCFSNL SQQPINTGHK SILASSSLHQ QKQLINEAHR LDPYIGA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14250KKAKRKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028345m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405709.14e-98NAC domain-containing protein 96
RefseqXP_024014430.11e-100NAC domain-containing protein 55
TrEMBLV4NL771e-128V4NL77_EUTSA; Uncharacterized protein
STRINGXP_006405708.11e-129(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.11e-11NAC domain containing protein 88