PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028761m
Common NameEUTSA_v10028761mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 360aa    MW: 39024.1 Da    PI: 7.0903
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028761mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.56.2e-23243306164
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                      eke+kre+rkq+NRe+ArrsR+RK+ae+eeL  kv++L aeN++L++++ +l++e++kl+ e+e
  Thhalv10028761m 243 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKVGQLNDESEKLRLENE 306
                      89*********************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-31193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.9E-14127225No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-15239302No hitNo description
SMARTSM003383.5E-20243307IPR004827Basic-leucine zipper domain
PfamPF001708.6E-22243305IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.817245308IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-10246302No hitNo description
CDDcd147023.44E-20248297No hitNo description
PROSITE patternPS000360250265IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGSNEEGKST KSDKPSQAAP EQNNVHVYHH DWAAMQAYYG PRVAIPQYYN SNVAPGHAPP  60
PYMWGSPSPM MSPYGAPYPP FCPPGGVYAH AGVQMGSQSQ GPVSQATPVV TTPLNMDAPA  120
NSPGNTDHGF MKKLKEFDGL AMSITNNKVG SAEHSSEPRN SQSSENDDSS NGSDGNTTGG  180
EQSRKKRSRE GSLTNDGKPA AQTSAPFRDE NEKPAATMVT PIIPTAMDFP QPFHGAPHEV  240
WNEKEVKREK RKQSNRESAR RSRLRKQAET EELSVKVDAL VAENMTLRSK VGQLNDESEK  300
LRLENEALLD QLKAAQTQVT GKTENLISRV DKNNSVSSSK NVEHQLLNVS LRTDSVAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259265RRSRLRK
2259266RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028761m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY169530.0Y16953.1 Sinapis alba mRNA for G-box binding factor 2A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396298.10.0G-box-binding factor 2
SwissprotP427750.0GBF2_ARATH; G-box-binding factor 2
TrEMBLV4MYT20.0V4MYT2_EUTSA; Uncharacterized protein
STRINGXP_006396298.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-153G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]