PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028924m
Common NameEUTSA_v10028924mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 238aa    MW: 25638.1 Da    PI: 6.3876
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028924mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.52e-37241251101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasn +kll  +p ++r da+ +l yeA ar++dPvyG+vg+i++lq+q+++l+ae
  Thhalv10028924m  24 PCGACKFLRRKCVAECIFAPYFDSEEgTAHFAAVHKVFGASNASKLLFMIPASRRLDAVVTLSYEALARLSDPVYGCVGHIFALQHQVMNLEAE 117
                      7*********************998879****************************************************************** PP

           DUF260  94 lallkeel 101
                      la+++++l
  Thhalv10028924m 118 LAMVQTQL 125
                      ***99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.41423125IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3624122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MPHQTEYYVS TKKMSGSTIG GASPCGACKF LRRKCVAECI FAPYFDSEEG TAHFAAVHKV  60
FGASNASKLL FMIPASRRLD AVVTLSYEAL ARLSDPVYGC VGHIFALQHQ VMNLEAELAM  120
VQTQLSTLQG LPPPNPQKSS PTEAVSSSNA PLVASVDNNK INNVVSSSLL HVAHGMSQQQ  180
QQQPKDDIEV STESVNFSTL FGLDDPLMDQ GGDLNALARE FFSKYLTEVK LRPSSPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-37171324123LOB family transfactor Ramosa2.1
5ly0_B4e-37171324123LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028924m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396220.11e-177LOB domain-containing protein 31
SwissprotO813221e-110LBD31_ARATH; LOB domain-containing protein 31
TrEMBLV4LD241e-175V4LD24_EUTSA; Uncharacterized protein
STRINGXP_006396220.11e-176(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-112LOB domain-containing protein 31