PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10029034m

Common Name

EUTSA_v10029034mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

DBB

Protein Properties

Length: 160aa MW: 17554.6 Da PI: 4.5877

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10029034m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.5	8.3e-06	4	45	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ +e+ e++ C +++ lC+ C ++ H+ H+v Thhalv10029034m 4 QCEVCEKAEAEVLCCSDEAVLCKPCDTKVHEAnklfqrhHRV 45 7*****************************778888885554 PP
2	zf-B_box	27.9	4.7e-09	59	95	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38 + C+ ++e + +fC +++ llC+dC ++H ++H+ Thhalv10029034m 59 PLCDICQERKGYFFCLEDRALLCNDCDGAIHicNSHQ 95 78****99******************8546687 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.04	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	6.02E-5	3	47	No hit	No description
SMART	SM00336	1.2E-6	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.944	56	99	IPR000315	B-box-type zinc finger
SMART	SM00336	2.3E-11	56	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.7E-7	59	95	IPR000315	B-box-type zinc finger
CDD	cd00021	2.03E-6	59	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MKIQCEVCEK AEAEVLCCSD EAVLCKPCDT KVHEANKLFQ RHHRVDLQKN TATVASGGPL 60 CDICQERKGY FFCLEDRALL CNDCDGAIHI CNSHQRYLLS GVQVSDPSLT ENSGCSTSFS 120 SETYQIQSKP SLNSQYSSEE TEAGNSFETD MNPCVILSP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250\|UniProtKB:Q9SJU5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10029034m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353341	0.0	AK353341.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-E09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397088.1	1e-115	B-box zinc finger protein 23
Refseq	XP_024010030.1	1e-115	B-box zinc finger protein 23
Swissprot	O82617	6e-91	BBX23_ARATH; B-box zinc finger protein 23
TrEMBL	E4MXU4	1e-114	E4MXU4_EUTHA; mRNA, clone: RTFL01-35-E09
TrEMBL	V4N0M7	1e-114	V4N0M7_EUTSA; Uncharacterized protein
STRING	XP_006397088.1	1e-114	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12502	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10240.1	2e-93	DBB family protein

Link Out ? help Back to Top
Phytozome	Thhalv10029034m
Entrez Gene	18015126

Publications ? help Back to Top
Zhang X, et al. A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis. Plant Physiol., 2017. 174(4): p. 2487-2500 [PMID:28687557]