PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029162m
Common NameEUTSA_v10029162mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 223aa    MW: 25661.4 Da    PI: 9.9501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029162mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.23.5e-32661884128
              NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                       frF+Pt eelv +yLk+ +++k +     +++v+iy+++P++L + +k+ + +ew+f s+r + ++ gk++nr  + gyW+ tg  ++  + +
  Thhalv10029162m  66 SFRFSPTYEELVLHYLKPFLKSKATIW--PVHHVNIYESNPKQLSAGYKKgNLTEWFFVSERTNMHKGGKKQNRGDNGGYWHVTGAATKFNA-G 156
                      79*******************999444..69*************9644441556********************99**************99.9 PP

              NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   g k +Lv+y+ r+p+g+kt+W+m+ey l
  Thhalv10029162m 157 NGIFGNKASLVYYTRRKPNGVKTNWLMKEYWL 188
                      999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.34463207IPR003441NAC domain
SuperFamilySSF1019411.44E-3363194IPR003441NAC domain
PfamPF023652.5E-1766187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
ENVVFIDIRE ILQNPDKLKL DTVNHSVAMM SDERNKCKER SSPEPQTQPP SPKHDPDMVS  60
SSSAASFRFS PTYEELVLHY LKPFLKSKAT IWPVHHVNIY ESNPKQLSAG YKKGNLTEWF  120
FVSERTNMHK GGKKQNRGDN GGYWHVTGAA TKFNAGNGIF GNKASLVYYT RRKPNGVKTN  180
WLMKEYWLEP CSDDNLRSQT IFMIYWIMML RVFLLLHRMT GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-176618818140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029162m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460408.12e-52PREDICTED: NAC transcription factor 29-like
RefseqXP_018460409.14e-54PREDICTED: NAC transcription factor 29-like
TrEMBLV4L4471e-167V4L447_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006397001.11e-168(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.11e-42NAC domain containing protein 64