PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029232m
Common NameEUTSA_v10029232mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 259aa    MW: 29735.1 Da    PI: 6.3424
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029232mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.73.5e-21104164259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK++k s++ r Y+rC++a   +C+++k+v++ ++ p+v  +tY g+H+++
  Thhalv10029232m 104 HDGFSWRKYGQKKIKTSTHQRCYFRCAYAkdqNCNATKRVQQIQDSPSVYRTTYIGKHKCQ 164
                      7***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.79798166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-2398165IPR003657WRKY domain
SuperFamilySSF1182904.58E-22100164IPR003657WRKY domain
SMARTSM007745.3E-32103165IPR003657WRKY domain
PfamPF031063.8E-22105164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MFPGVDEAVQ ALLHGQESAN RLKSVLEHPR TSSVPTEPLF DTVLESFSTA LSFFTNFTSC  60
EPRQYHDSSQ NMATLVARKS PKKKSYTKDG LTHYRDDSPT PLHHDGFSWR KYGQKKIKTS  120
THQRCYFRCA YAKDQNCNAT KRVQQIQDSP SVYRTTYIGK HKCQVTVFSQ PSEDITDGSK  180
MIQFDRLDQL MPDLVLPQLV SVDHQETIEN EGTYHTNTMN QDYVNDELLV DDEKFWAYQF  240
PPFSPGNFMF LDNISTFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-161051641069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029232m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397159.10.0probable WRKY transcription factor 64
SwissprotQ9C5574e-82WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLV4L8D80.0V4L8D8_EUTSA; Uncharacterized protein
STRINGXP_006397159.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.11e-84WRKY DNA-binding protein 64