PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029319m
Common NameEUTSA_v10029319mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 298aa    MW: 33647.2 Da    PI: 4.3231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029319mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.4e-061742121255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L++l+ +      +K + a++L +AveYIk Lq
  Thhalv10029319m 174 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 212
                      677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.17E-7155215No hitNo description
PROSITE profilePS5088812.379162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-11172223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-4173217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-10176221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTGEFEIAGI STGTWWSSPT NAETVFSGYS LTRPTENISL DISDFGWQNF DNKFNDRNDD  60
LLNIHNSFFD GLFDPNEQII SDSWAKTTIP DSKSELLESL PFLDNTFLID SEAESFLDHE  120
IRNYKSKEQI TQDSKNLITK KSEESEENVD EYSPRMLKRP RIETLSSLPS FKVRKEKLGD  180
RITALQQLVS PFGKTDTASV LNEAVEYIKF LQEQVTVLSN PDQNTRGSVQ RQQFSDKKSI  240
NTQEEEEECS SRKHVDLASR GLCLMPISTT YPVAAAAASA AEMNTSDFWN FPFSVNV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029319m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396624.20.0LOW QUALITY PROTEIN: transcription factor bHLH114
SwissprotQ9M0X81e-151BH114_ARATH; Transcription factor bHLH114
TrEMBLV4L6X40.0V4L6X4_EUTSA; Uncharacterized protein
STRINGXP_006396624.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.11e-117bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]