PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10029492m

Common Name

EUTSA_v10029492mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Dof

Protein Properties

Length: 294aa MW: 33006.3 Da PI: 8.1092

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10029492m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.1	1.7e-37	58	116	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk Thhalv10029492m 58 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGCRKNKK 116 67899****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	57	113	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	60	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.63	62	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDHHNYHHQA HDQYQHITNN NPYNTIITTP QPRTTTMDSA TTIMDEEKKM MTTMPTRPQE 60 PRNCPRCNSS NTKFCYYNNY SLAQPRYLCK SCRRYWTEGG SLRNVPVGGG CRKNKKLPFL 120 LSNSSSSSPT TSTKNIPDLN PSSVFTSSSS SSKPSKSHPS NNGLSLSFSA PTMQDERAQG 180 PYGHFTDQAM TGGQNCLFTA PMGMIQFRQE YNHDHSKINL GFSLDRNKEE IVNHDNFVVN 240 EGGSKLMFPY GDHDEHHRHH ERHDDGNKKR ESGSSNELWS GIILGGDSGG PTW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10029492m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006396320.1	0.0	dof zinc finger protein DOF4.1
Swissprot	Q9M161	1e-140	DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBL	V4LDB6	0.0	V4LDB6_EUTSA; Uncharacterized protein
STRING	XP_006396320.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14695	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00940.1	1e-113	Dof family protein

Link Out ? help Back to Top
Phytozome	Thhalv10029492m
Entrez Gene	18014925