PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029523m
Common NameEUTSA_v10029523mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 543aa    MW: 61293.4 Da    PI: 7.7195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029523mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.7e-053593961355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R++ N++f+ L+ ++P+ +       ++K +iL  +++Y+++L+
  Thhalv10029523m 359 RRKENEKFSVLKAMVPTvN------EVDKESILNNTIKYLQELE 396
                      6777*************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-4719203IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.382346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-8352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-8359410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-9359406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MADGVEAARG RSKKQNSILR KQLAIAVRSV QWSYGIFWSS SSTQSGVLEW GEGCYNGDIK  60
KRKKRYEAHC KYGLQRSKQL RKLYLCMLEG DSSTTTHDDH SDHNCNSSTS MMLSPDDLSD  120
EEWYYLVSMS YVFSPSQCLP GRALATGETI WLCNAQYAEN KFFSRSLLAR TVVCFPYSCG  180
VIELGVTELI SEDHSLLQHI KSCLLETSKP DNSLNNFSAH QDNDAEKNQM KIKISDGNSV  240
LQENHKIQFG ISDLMSDEDL HYKTTVSTVL KYAADISKRN DKNIQADLVS SNCGSSFLRW  300
KRHEQPNSKL LQKHSIAQPL SQTVLRKILH DVPLMHSADS KGMFPSKRFG LNQDDPSDRR  360
KENEKFSVLK AMVPTVNEVD KESILNNTIK YLQELEERVE ELESCMGSVN FVERQRKTTK  420
SLDGSVLIEE TSGNYDDSTK IDGNSGETVQ VTVSRDQTHL RVKLKETEVV IEVKCSYRDY  480
IVADIMESLS KLHMDAFSVR SHTLNGFLTL NVKAKLRGTA VASVGMIKRE LRRVIGESMR  540
IT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-112020412192Transcription factor MYC3
4rqw_B4e-112020412192Transcription factor MYC3
4rs9_A4e-112020412192Transcription factor MYC3
4yz6_A4e-112020412192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029523m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBankAF2516970.0AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010505.10.0transcription factor MYC1
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLV4L2300.0V4L230_EUTSA; Uncharacterized protein
STRINGXP_006396246.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein