PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g00280
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 54aa    MW: 6193.25 Da    PI: 8.8171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g00280genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042527123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C+ C ksF +   L  H+r+H
  Tp1g00280  5 HNCKLCWKSFVNGRALGGHMRSH 27
               67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.41E-7233No hitNo description
Gene3DG3DSA:3.30.160.606.2E-4227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.1E-8528IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533532IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MEEKHNCKLC WKSFVNGRAL GGHMRSHMLH HPLPTQQKLL EVTKDLTPPP PPPE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g00280
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171705.13e-16C2H2-like zinc finger protein
SwissprotQ390922e-17ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBLA0A087HKC14e-15A0A087HKC1_ARAAL; Uncharacterized protein
STRINGBostr.5325s0123.1.p1e-16(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.19e-20C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]