PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g00790
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 256aa    MW: 29680.7 Da    PI: 9.9441
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g00790genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.6e-143074147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
        Tp1g00790 30 RENWTEQEHDKFIEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 74
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-162480IPR009057Homeodomain-like
PROSITE profilePS5129415.7662579IPR017930Myb domain
TIGRFAMsTIGR015571.1E-172877IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.0E-72880IPR009057Homeodomain-like
SMARTSM007172.0E-112977IPR001005SANT/Myb domain
PfamPF002494.9E-123074IPR001005SANT/Myb domain
CDDcd001671.42E-83275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MPVSVRNNTM SFYEDPTKKT RKPYTITKSR ENWTEQEHDK FIEALHLFDR DWKKIEAFVG  60
SKTVIQIRSH AQKYFLKVQK NGTNEHLPPP RPKRKANHPY PQKAPKSAAL TSSNALLEHE  120
YLYTTDSKAM ISTPKHGFMR RDVITPNPVI KEELGVPENC CSSSSSRDKQ RTRTVSETNE  180
QESCEKRHRV MPNFVEVYSF IGSVFDPQTT GHVQRLKQMD PINLETVLLL MRNLSVNLKS  240
PEFEEQRNLI SSYNGK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g00790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418431.11e-165protein REVEILLE 3
SwissprotQ6R0H01e-152RVE3_ARATH; Protein REVEILLE 3
TrEMBLV4KZJ01e-163V4KZJ0_EUTSA; Uncharacterized protein
STRINGCagra.1968s0093.1.p1e-165(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.11e-154MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]