PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g03180
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 137aa    MW: 15050.3 Da    PI: 6.8083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g03180genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-202070255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr+++ +g+++AeIrd ++ g   r++lg+f+tae+Aa+a+++a+ +++g
  Tp1g03180 20 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 70
               79*******.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.72E-172079No hitNo description
PfamPF008473.5E-142070IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-312080IPR001471AP2/ERF domain
SMARTSM003804.3E-352084IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-232080IPR016177DNA-binding domain
PROSITE profilePS5103223.4592078IPR001471AP2/ERF domain
PRINTSPR003672.9E-112132IPR001471AP2/ERF domain
PRINTSPR003672.9E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDQGGRSGGG GGGGGAEQGK FRGVRRRPWG KYAAEIRDSR KHGERVWLGT FDTAEDAARA  60
YDRAAYSMRG QAAILNFPHE YNMGSGSTSN AAATAVSSSS SRQVFEFEYL DDSVLDELLE  120
YGENYNKNNN INMDKRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-5411141114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311GGRSGGGGG
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g03180
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324371e-145AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490322.18e-62PREDICTED: ethylene-responsive transcription factor 14-like
SwissprotP938227e-58ERF97_ARATH; Ethylene-responsive transcription factor 14
TrEMBLA0A078IT591e-60A0A078IT59_BRANA; BnaAnng12120D protein
STRINGXP_006418136.13e-60(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.12e-48Ethylene-responsive element binding factor 14