PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g04530
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 149aa    MW: 16589 Da    PI: 8.701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g04530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.000137761054
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               + R d++ ++++ L++++ +      +K + a++L  A++YI  L
  Tp1g04530 37 KERKDKVGERISALQQIVSPY-----GKTDTASVLLDAMHYIEFL 76
               67899999***********99.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.3472776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-82796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-43281No hitNo description
SMARTSM003530.0043582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-103790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEFSRNAGMV MENKRNVCSL EESSIKRHKS DLSFNSKERK DKVGERISAL QQIVSPYGKT  60
DTASVLLDAM HYIEFLHEQV KLLSAPYLQT MSAATQVELE QYSLRNRGLC LVPMESTVGV  120
AQSNGADIWA PVKTPPSPAL SVKSQSPFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g04530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530540.0AK353054.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417995.11e-102transcription factor bHLH153
SwissprotQ7XJU21e-98BH153_ARATH; Transcription factor bHLH153
TrEMBLE4MX071e-101E4MX07_EUTHA; mRNA, clone: RTFL01-13-J10
TrEMBLV4L9961e-101V4L996_EUTSA; Uncharacterized protein
STRINGXP_006417995.11e-102(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-101bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]