PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g05580
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 344aa    MW: 37771 Da    PI: 5.6668
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g05580genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.1e-10155204554
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l   + 
  Tp1g05580 155 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLFQR 204
                9****************************************998876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.3E-16151215IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.909153216IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-10155206No hitNo description
PfamPF001703.6E-8155203IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.7E-10155210No hitNo description
CDDcd147031.94E-22156205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEKSDPPQKP AALIPSDPHP IPNADPIPSS FHRRSRSDDM SMFMFMDPLI SSSGAPPSSD  60
DLPSDDDLFS SFIDVDSLSS NPHPPISFPN PSAASLSSNS ISGGNPPPTS SSSRPRHRHS  120
NSVDAGCAMY ASEVMDAKKA MPPEKLSELW NIDPKRAKRI LANRQSAARS KERKARYIQE  180
LERKVQSLQT EATTLSAQLT LFQRDTNGLA NENTELKLRL QAMEQQAQLR NALNEALRKE  240
VERMKMETGE MSGNSDSFDM GMQQIQYSPS TFMAIPPYHG SINSQDMQMR GFNPSHPMEM  300
SNSQSVSEFL QNGRLQGLEI SSNSSSLVKS EGPSLSASES SSAY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00129DAPTransfer from AT1G06850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g05580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417873.10.0transcription factor RF2b
SwissprotQ6S4P43e-82RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A1J3GSS40.0A0A1J3GSS4_NOCCA; Transcription factor RF2b
STRINGXP_006417873.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-130basic leucine-zipper 52
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]