PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g06270
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 621aa    MW: 69062.8 Da    PI: 9.6531
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g06270genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07519568147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
        Tp1g06270 519 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 568
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864514573IPR017930Myb domain
SMARTSM007177.0E-7518571IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-10519569IPR009057Homeodomain-like
CDDcd116607.90E-17520570No hitNo description
SuperFamilySSF466892.08E-15520601IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MVLQKRLDYG FTGYEVPPTP RAARSPRKSA FKKRSENNQI SSFDLLAAVA GKLLLESGGN  60
SSSSSNNASG DNNNEDQCAV KREDQTVAEE TDCDQHHDNN AERRFFVSEI LPKAHEMESF  120
NRSPSPPKDF HFGSTSGITS DSSDKFGTQE LAYDDNGDCF RSETNDKKKS MLGGLHCEPE  180
LSRNVVAKDK HHIGSGFRKP IPQSPSVCSD DVDLLNGTEN DDGENLSSRY TTKSFRSTLR  240
IGDRRIKKVL ASKYCKVPPK QKESAVTNSD LDLKPSYYSK KQCLGSLRSE RNYPIKKRRY  300
FDGYTASQSE ETVKNESLSV SPQKAFQSSI ACQKQPAFQS RDSHLKLGIK SFGVPELFIE  360
IPENATVGSL KRTVLEAVTT ILGGGLRIGV LVHGKKVRDD NKMLLQTGIS LDSLSDSLGF  420
CLEPNPPQTT KLLSPEDSDF VRPCNVPHTL TRCLPSPGKH AKPSNAVESD LDSKPSAPNR  480
AKPVYSRALI PVSPLHAQAL NVVPPRKPKR SEVAQRRIRR PFSVAEVEAL VQAVERLGTG  540
RWRDVKLRAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLMAHAYWS  600
QQQGKQQLLE GPQKLETSLG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-575066084106Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g06270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417794.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLV4L1H90.0V4L1H9_EUTSA; Uncharacterized protein
STRINGXP_006417794.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2