PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g06610

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NF-YC

Protein Properties

Length: 212aa MW: 23884.8 Da PI: 10.0374

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g06610	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	50.7	4e-16	107	194	12	99
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++d k ++P+ ri++i+++d+ +i +a l+ ka elfi t ++ + + k++ ++ +++av++ + ++fl d vp++ Tp1g06610 107 GVEDAKTFRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATELFIKRCTEEAYETSVQDKKKFIHYKHLSSAVSNEERYEFLADYVPEK 194 57899999*****************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.5E-19	101	193	IPR009072	Histone-fold
Pfam	PF00808	3.0E-21	115	178	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.9E-25	116	193	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MVASRKPSEE KKPRSDGVNK AGGRNTRSSG SKTKKKTPNK AILEGIVKKE PEIYEISESS 60 STGSVEEARR DETKKSNGVV VNKGRDGKGG SIPANRRKNR EEEHGGGVED AKTFRFPMNR 120 IRRIMRSDNS APQIMQDAVF LVNKATELFI KRCTEEAYET SVQDKKKFIH YKHLSSAVSN 180 EERYEFLADY VPEKLKAEVA LEEWERSMTD AG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g06610

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023645785.1	5e-99	nuclear transcription factor Y subunit gamma
TrEMBL	A0A1J3HC74	1e-104	A0A1J3HC74_NOCCA; Chromatin accessibility complex protein 1
STRING	Cagra.1637s0006.1.p	3e-99	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	4e-75	nuclear factor Y, subunit C10