PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g07110

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

YABBY

Protein Properties

Length: 233aa MW: 26308 Da PI: 9.5042

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g07110	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	193.4	1e-59	52	209	11	170
YABBY 11 CyvqCnfCntila.....vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl.... 101 yv C + + + vsvP++slf++vtvrCG+C +lls+n+ ++ ++ + ++++l+ ++++++s v+++e+ s+s+ss+++ Tp1g07110 52 VYVSCMIQQILQIglcdqVSVPYASLFTLVTVRCGYCNNLLSLNIGVSLHQSSPPP---------IHQDLQ-HKQHITSSVTRKECGSSSRSSNHFstts 141 5666655443321222339************************99888755444.........566554.5566777777777777777777773333 PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 se d+e+pr+p irPPekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWahfP+ihfgl Tp1g07110 142 SEIVDREAPRMPS-IRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHFPHIHFGL 209 5556788888766.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-57	69	209	IPR006780	YABBY protein
SuperFamily	SSF47095	1.09E-7	154	202	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.9E-5	157	203	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEYLTYVISQ ALSLNSMHNI TKFYPITLEI YLTGQPNYRI VIIKQDSSNL SVYVSCMIQQ 60 ILQIGLCDQV SVPYASLFTL VTVRCGYCNN LLSLNIGVSL HQSSPPPIHQ DLQHKQHITS 120 SVTRKECGSS SRSSNHFSTT SSEIVDREAP RMPSIRPPEK RQRVPSAYNR FIKEEIQRIK 180 TSNPEISHRE AFSAAAKNWA HFPHIHFGLK LDGNKKGKQL DQTVAGQKSN GYC

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g07110

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353326	0.0	AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006303358.1	1e-106	putative axial regulator YABBY 2
Swissprot	Q9XFB0	7e-99	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J3H5B1	1e-107	A0A1J3H5B1_NOCCA; Putative axial regulator YABBY 2
STRING	Bra018624.1-P	1e-107	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-95	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]