PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g08300
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 624aa    MW: 65461.2 Da    PI: 9.9903
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g08300genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85e-08197225129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      r++W++eEd  l+ avk+ G g+W+ I +
        Tp1g08300 197 RKKWSAEEDAELIAAVKRCGEGNWAHIVK 225
                      789**********************9954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.579192248IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-11193242IPR009057Homeodomain-like
SuperFamilySSF466894.45E-11194247IPR009057Homeodomain-like
SMARTSM007171.3E-7196247IPR001005SANT/Myb domain
PfamPF002493.8E-6197225IPR001005SANT/Myb domain
CDDcd116603.66E-12198246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MGDSSSKRRK ATITEGDTAT LLQRYDVKTI LRLLQEMAFY SDIKMDWNEL VKKTTTGITN  60
AREYQLLWRH LSYRDPLLPV EDDAQPLDDD SDMECELEAS PAVSLEASVE ATAHVKVLAA  120
SYVPSESDLL DDSTFEAPLT INIPYSLPEG TQETSESPWL SRGMNITFPV CLQKATSTEG  180
VNGNGAGSSS MASRRKRKKW SAEEDAELIA AVKRCGEGNW AHIVKGEFRG ERNASQLSQR  240
WALIRRRCDI STSASQSGLP QTEAQVAVNH ALSLALGNRP PSKKVPVGVS PATSSCAITE  300
KLGIGGSSSQ GQQLSRPVVV QTLSRAATSV PASKSRAGAK KTAASSTFRS DLMATANSAA  360
AAALGGVSTA ASVPKVEPGK PDAPLMPKTK NMSTACMPRP SGSLVVPKVE PGKSVASSSI  420
TKAVGPANTR PLANGNLKHV TPLSSSIKPP LMASHSEGST MISASTPLAS ASKMVSNQRV  480
FAAPVRATVL PPKPTAETVT CKPDGGQKEQ ARGDGASSLV ASQPNKITST NSEISRGKPA  540
TQAQSLNLLP RKIPVAQTTV LCATNQNLVD KPSNKTAVPF ISGAGSQSKA KCEVNNKVGS  600
VIKVSNACGK PPEVATVGGT RQGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g08300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868170.10.0uncharacterized protein LOC9328581 isoform X2
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGBostr.25494s0029.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein